PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511409.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 782aa    MW: 86116 Da    PI: 6.216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-19277376198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++  +  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  +++
  XP_016511409.1 277 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSDGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGK 369
                     99**************************556666778***************9989999999***9.********************887.7887 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_016511409.1 370 LVMGFRK 376
                     8888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-21274377IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-29274380IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-24275376No hitNo description
SMARTSM010193.1E-22277377IPR003340B3 DNA binding domain
PfamPF023621.9E-16277376IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237277378IPR003340B3 DNA binding domain
PROSITE profilePS5105013.76482536IPR011124Zinc finger, CW-type
PfamPF074963.4E-10487533IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MGDSGWRECK MCGKHLHCGC IASKYLFEYL DFGGVGCISC ARCLDDHSMR PMQVPADDFR  60
DSAFGTNFIQ PLHVEKGVDK TNFDKGRLPI VNNIMEISEP GQPFQSQKDE NNVSLGKTKQ  120
EKVLPVGDVS TCFSNLNQQS IASLFREQDN SKPNQGVKEM YDTTNQPSLD FSLSTPVGCS  180
SSGLSFPDGG VEGREHEKTP FQQGLRTRHI LLKPLKPSPS FGSDSNKELP SQTRIARPPA  240
EGRGGRNQLL PRYWPRITDQ ELCQLSGDLN SAIVPLFEKV LSASDAGRIG RLVLPKACAE  300
AYFPPINQSD GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVT  360
FSRIDPGGKL VMGFRKATNS VETQDPQSSH LPDGSGSADT SFTGLTENLN KKTTNIGSKN  420
KRLLMHADDA MELRITWEES QELLRPPPTT QPTILVIEDC EFEAYDEPPV FGKQTIFTSR  480
PSGDQEQWAQ CDSCSKWRRL PMHVLLPPKW TCSDNIWDSN SFLYRCSCSA PEEIKAKELE  540
AFFRVSKGHK RQKIAGKNED CEPSGLNALA TVAVLGDSIS DLGEPLVGAT TKHPRHRPGC  600
TCIVCIQPPS GKGKHQPTCK CNACLSAERR FKTLMLRKKK KQSEREAEVA QAKDQVPPKD  660
GSETDGASGA ELMMQTSHSE NERNTNGDHM EKVGAGKGQL DLNCHPNRED EMLIEAAAGI  720
SMTSLINAAD LPLDMYQTQN GLATLDKCLL SLATAGSEGQ QPDNGCVRPA DAQVQENNGD  780
NG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-1427638813129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511409.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK4CAB10.0K4CAB1_SOLLC; Uncharacterized protein
STRINGSolyc06g082520.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1